rs264710223 SNP Detail

Summary

• ID
  rs264710223
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117149968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCTCACC GGTTCATCTG
  CCCATTAGGA AGTTCTAGGG ATGGGAGAAA GAACACGGCG TCAATTAACA AATCCACAAA
  GCTAAGACCT TGAAGCATTC TGTGAACTTG TAAACGCGCT CAGGCAACCA TTGGACAATT
  TGTCTAGACT GCTCCTTGCC CACCTGAACT GCCCTGTTCC TCCCCTTCTG GACTCCTGCC
  R
  TCTTCCTCCA GAGCTACCTT TAAGGTTGTC CCATGTACTA TCAAGGTGCT CTGTCAAAAG
  TTCTTAGGCT GCTTCTGGCA CTCTCCAGAA TTTTCCAAGA CCTCCCCCCC ACCATGATAT
  CAGTCATCCG CGCCTTCTGG GTGGTTCTTC CTCCACACCC TTTGGGCACT TTGACTCCTG
  TGGGATATTC GTCCTTCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369791568	MGP_WTSI_6_117123025	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264710223					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369791568	MGP_WTSI_6_117123025	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117149968 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	339 bp distal
Rr637289	regulatory region 637289	859 bp proximal
Rr637290	regulatory region 637290	1044 bp proximal
Rr637291	regulatory region 637291	1095 bp proximal
Tssr58392	transcription start site region 58392	1520 bp downstream
Tssr58393	transcription start site region 58393	1501 bp downstream
Tssr58394	transcription start site region 58394	1461 bp downstream
Tssr58395	transcription start site region 58395	485 bp upstream
Tssr58396	transcription start site region 58396	501 bp upstream
Tssr58397	transcription start site region 58397	539 bp upstream
Tssr58398	transcription start site region 58398	565 bp upstream
Tssr58399	transcription start site region 58399	587 bp upstream
Tssr58400	transcription start site region 58400	615 bp upstream
Tssr58401	transcription start site region 58401	651 bp upstream
Tssr58402	transcription start site region 58402	682 bp upstream
Tssr58403	transcription start site region 58403	700 bp upstream
Tssr58404	transcription start site region 58404	719 bp upstream
Tssr58405	transcription start site region 58405	761 bp upstream
Tssr58406	transcription start site region 58406	791 bp upstream
Tssr58407	transcription start site region 58407	822 bp upstream
Tssr58408	transcription start site region 58408	889 bp upstream
Tssr58409	transcription start site region 58409	911 bp upstream
Tssr58410	transcription start site region 58410	933 bp upstream
Tssr58411	transcription start site region 58411	949 bp upstream
Tssr58412	transcription start site region 58412	976 bp upstream
Tssr58413	transcription start site region 58413	989 bp upstream
Tssr58414	transcription start site region 58414	1022 bp upstream
Tssr58415	transcription start site region 58415	1037 bp upstream
Tssr58416	transcription start site region 58416	1052 bp upstream
Tssr58417	transcription start site region 58417	1106 bp upstream
Tssr58418	transcription start site region 58418	1139 bp upstream
Tssr58419	transcription start site region 58419	1158 bp upstream
Tssr58420	transcription start site region 58420	1185 bp upstream
Tssr58421	transcription start site region 58421	1204 bp upstream
Tssr58422	transcription start site region 58422	1230 bp upstream
Tssr58423	transcription start site region 58423	1238 bp upstream
Tssr58424	transcription start site region 58424	1300 bp upstream
Tssr58425	transcription start site region 58425	1345 bp upstream
Tssr58426	transcription start site region 58426	1367 bp upstream
Tssr58427	transcription start site region 58427	1394 bp upstream
Tssr58428	transcription start site region 58428	1409 bp upstream
Tssr58429	transcription start site region 58429	1474 bp upstream
Tssr58430	transcription start site region 58430	1519 bp upstream
Tssr58431	transcription start site region 58431	1615 bp upstream
Tssr58432	transcription start site region 58432	1688 bp upstream
Tssr58433	transcription start site region 58433	1724 bp upstream
Tssr62617	transcription start site region 62617	549 bp downstream
Tssr62618	transcription start site region 62618	571 bp downstream
Tssr62619	transcription start site region 62619	607 bp downstream
Tssr62620	transcription start site region 62620	650 bp downstream
Tssr62621	transcription start site region 62621	716 bp downstream
Tssr62622	transcription start site region 62622	1268 bp downstream
Tssr62623	transcription start site region 62623	1286 bp downstream
Tssr62624	transcription start site region 62624	1401 bp downstream
Tssr62625	transcription start site region 62625	1552 bp downstream
Tssr62626	transcription start site region 62626	1648 bp downstream
Tssr62627	transcription start site region 62627	1679 bp downstream
Tssr62628	transcription start site region 62628	1814 bp downstream
Tssr62629	transcription start site region 62629	1994 bp downstream