rs264700917 SNP Detail

Summary

• ID
  rs264700917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22034385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCACTGGA TCCCTTTCAC
  GCCACTTATT TTCAGTCGTG AGATTCCCCC ACTAGAATGG TTGCAGTGAG AACCAGAAAT
  TTTCATTAAA CTCTCCCCCG CCCTCCCGGC CCCCAGTTCT GAGCCGATCA CTGGGGAGCA
  CAGCCAGGGC CTGGCCCGGC CTCGCTTGCT TCCGAAGGCT GTAATTTGCA CACTCGCCTC
  Y
  GGGTGGTTCT CCAGCCAGGA GGCTCGCAGG TCCACGCCCC TTGGCACCGG AGCCTCCTCC
  CTGGCTTCCC CGCGGGCGGC GCCTTCCGCC CTCCGCCATT GTGTCCATCC CCTGCCCGCA
  GAGCGCCGCT TGCCCGGGCC GCTGTAGTCA GTTACCTGCT CCGCCGGGCG AACACGTGCG
  GGGGCAGACA GACACTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss379694004	MGP_WTSI_10_21878292	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs264700917					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379694004	MGP_WTSI_10_21878292	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22034385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	within coordinates
Cpgi1374	CpG island 1374	701 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	123 bp upstream
Raet1e	retinoic acid early transcript 1E	56 bp upstream
Rr384270	regulatory region 384270	847 bp upstream
Rr428833	regulatory region 428833	within coordinates
Rr428834	regulatory region 428834	111 bp proximal
Tssr92677	transcription start site region 92677	81 bp downstream
Tssr92678	transcription start site region 92678	5 bp downstream
Tssr92679	transcription start site region 92679	35 bp upstream
Tssr92680	transcription start site region 92680	80 bp upstream