rs264697773 SNP Detail

Summary

• ID
  rs264697773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:21630252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCCTTTC TGGGAACTCA
  TCACCAAAAT CTCAAGCACT GTAAATCGGT GCAGCCTTTA AGTTACAGGA AAGAGTAAAG
  ACGTTCCCGC CCCAGATTGA GACTAAGGAC AGTGACCCGG AAGAAGTTCT TCTACTCTTT
  CCGTCCCAGC CCCAGGTCGG CCCACGTGAC TCATTAGGGA GGTCACGCTC GGCTCTGCCT
  Y
  GCCGCACATC CTCGACTACC GGCTTCACGG AAAGCCTTCC TCGGACCCAA GGTGCAAGTC
  CGGCTTTCTT CGAATCTAGA ACTCCCCCAT TGGCTCGAAC GCGGCTGTCC ATCACGGCGG
  AGGGACGGAG ATTCCCCGTT CCTATTGGCT CTTCTTTTCC GCAATCCCCG CCTCCTGCCG
  AACGCTCCCA ACCTGTCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402007538	MGP_WTSI_19_21727378	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264697773					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402007538	MGP_WTSI_19_21727378	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:21630252 () rs orientation: forward

Symbol	Name	Function Class
1110059E24Rik	RIKEN cDNA 1110059E24 gene	mRNA-UTR
Abhd17b	abhydrolase domain containing 17B	297 bp upstream
Rr405894	regulatory region 405894	within coordinates
Rr545134	regulatory region 545134	within coordinates
Rr545135	regulatory region 545135	396 bp proximal
Rr545136	regulatory region 545136	648 bp proximal
Tssr155500	transcription start site region 155500	within coordinates
Tssr155501	transcription start site region 155501	216 bp upstream
Tssr155502	transcription start site region 155502	225 bp upstream
Tssr155503	transcription start site region 155503	288 bp upstream
Tssr155504	transcription start site region 155504	309 bp upstream
Tssr155505	transcription start site region 155505	388 bp upstream
Tssr155506	transcription start site region 155506	414 bp upstream
Tssr155507	transcription start site region 155507	435 bp upstream
Tssr155508	transcription start site region 155508	540 bp upstream
Tssr155509	transcription start site region 155509	594 bp upstream
Tssr155510	transcription start site region 155510	634 bp upstream
Tssr155511	transcription start site region 155511	667 bp upstream
Tssr158593	transcription start site region 158593	165 bp upstream
Tssr158594	transcription start site region 158594	119 bp upstream
Tssr158595	transcription start site region 158595	69 bp upstream