rs264623035 SNP Detail

Summary

• ID
  rs264623035
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37713208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGTCCTT TACTCTTCTG
  TAGCCTAGTG ATCCTTCCAG AACAGAAGCC AGCTCTCTGT TAGGTCCCAG GCTCTCTGCA
  TACACTCCCC AAATATGGTA CAGAGCAGGG TGGATTCTGG AGAGCAGCCG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGAATT TATATATGTG TATACACACA
  Y
  ATACACACAC ACACACACAC ATATATATAT ATATATATAT ATGTATATAT ATATATATAT
  ATGGATGATA AATGATAACT CAGAGCATGT GGGTTAGTAG TGAGTGTGTA AGAGTTTAGT
  GGCAAGAATA TACATTTTTC TGCTCATAGG ATTGGATCTT ACATGTCCCA AGCTGGCCTT
  GAACTTGCTA TGTAGCCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	PWK/PhJ	SEA/GnJ	SJL/J	SPRET/EiJ	WSB/EiJ
ss357588516	MGP_WTSI_3_37557981	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	PWK/PhJ	SEA/GnJ	SJL/J	SPRET/EiJ	WSB/EiJ
rs264623035					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357588516	MGP_WTSI_3_37557981	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37713208 () rs orientation: forward

Symbol	Name	Function Class
Rr575533	regulatory region 575533	1617 bp distal
Rr575534	regulatory region 575534	510 bp proximal