rs264584088 SNP Detail

Summary

• ID
  rs264584088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164249099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGTCTCT CCTACCCCTT
  GACTGTTATT TTTGTTGTTG ATGTTGGTGG TGGTTCTGGT GCTGGTGGTG ATACTGGTGC
  TGTGTGGATG TATAGATGCC ACGATTCCTG TGGAGGTAAG AGGATAATGT GTGCAGTTAG
  GTGTACAGTT GGTTCTCTTC CTCCTTTTGA TGGGTTCTGG GCATTGAAGT CAAGTTATCA
  Y
  GCTTGCCTCA GCAAGCCTTT TATCCACTGA GCCACCTGTT ACTTAAGAAC TAATCTGGGG
  CTGGAGAGAC TACTCAGGGT TAAGAGCACT GGTGGCTGCT CTTCCAGAGG ACCTGAGTTC
  AATTCCTCGC AACTACTTGC TGGCTCACAA CCATCTGTAA TGGGATCTGA TGTTCTCTTC
  TGTCAGATGG TCTCTTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320605790	CHEV_2_164232679	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264584088					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164249099 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12658	CpG island 12658			663 bp proximal
Rbpjl	recombination signal binding protein for immunoglobulin kappa J region-like			Intron
				Noncoding-Transcript-Variant
Rr569600	regulatory region 569600			1786 bp distal
Rr569601	regulatory region 569601			497 bp proximal
Rr569602	regulatory region 569602			719 bp proximal
Tssr21580	transcription start site region 21580			1882 bp downstream