rs264569345 SNP Detail

Summary

• ID
  rs264569345
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:34723663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCTATTC AACTGAAGGG
  TTTGAATCTA ATAGATTCTC TAAAACTCAT TTCAATTCTA AGATCCTGTA AGTAATACGT
  GATTGTGTCC AGTCTCTCAG TATCCAAAGC TCACACTTTC TACAGTCATA AGCCAGGCAT
  CACGGGTGGC TAGCACACCA TTAGCTGTAG TTTAGTGTGA CTTGGGGGTG GGGGTGGGGG
  K
  GGGGGGGAGA AATTACACAG CCAGCAGCTG CAGATTTCAA CAGCTAGTGA GCTCAAATAC
  CCGTAGCCAC AGGGTCTTCC TGAACTTGGC AAGCCCGAAG ATTTTTTTCC TTCTGGGCTA
  GGTTTAGCAG AGACGCTGGA ATGCCCACAT AGCTCTCAGC AAAGCTGGGA AGAACAGCGG
  CCAGACAAAA TGCAAGCGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
ss402329704	MGP_WTSI_19_34820753	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	G	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
rs264569345					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402329704	MGP_WTSI_19_34820753	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34723663 () rs orientation: forward

Symbol	Name	Function Class
Rr394346	regulatory region 394346	739 bp downstream
Rr546785	regulatory region 546785	within coordinates
Rr546786	regulatory region 546786	1016 bp proximal
Rr546787	regulatory region 546787	1809 bp proximal
Slc16a12	solute carrier family 16 (monocarboxylic acid transporters), member 12	Intron
Tssr156164	transcription start site region 156164	37 bp upstream
Tssr159005	transcription start site region 159005	837 bp downstream
Tssr159006	transcription start site region 159006	870 bp downstream
Tssr159007	transcription start site region 159007	931 bp downstream
Tssr159008	transcription start site region 159008	960 bp downstream
Tssr159009	transcription start site region 159009	1028 bp downstream
Tssr159010	transcription start site region 159010	1058 bp downstream
Tssr159011	transcription start site region 159011	1171 bp downstream
Tssr159012	transcription start site region 159012	1190 bp downstream
Tssr159013	transcription start site region 159013	1220 bp downstream