rs264533688 SNP Detail

Summary

• ID
  rs264533688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:88197411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAC CTTTGGCCTC TCGCCAGCTT
  R
  CCAGGAGCAA CTCTGCTCCA GGAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375465993	MGP_WTSI_8_89994682	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	G	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264533688					SNP	A	A	A	G	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	G	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375465993	MGP_WTSI_8_89994682	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88197411 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbln1	cerebellin 1 precursor protein			Intron
				Noncoding-Transcript-Variant
Rr382427	regulatory region 382427			1508 bp downstream
Rr666962	regulatory region 666962			1593 bp proximal
Rr666963	regulatory region 666963			1718 bp proximal
Tssr2634	transcription start site region 2634			1743 bp downstream
Tssr78595	transcription start site region 78595			1988 bp upstream
Tssr78596	transcription start site region 78596			2000 bp upstream
Tssr82308	transcription start site region 82308			861 bp upstream
Tssr82309	transcription start site region 82309			674 bp upstream
Tssr82310	transcription start site region 82310			481 bp upstream
Tssr82311	transcription start site region 82311			322 bp upstream
Tssr82312	transcription start site region 82312			132 bp upstream
Tssr82313	transcription start site region 82313			106 bp upstream
Tssr82314	transcription start site region 82314			1338 bp downstream
Tssr82315	transcription start site region 82315			1378 bp downstream
Tssr82316	transcription start site region 82316			1417 bp downstream
Tssr82317	transcription start site region 82317			1582 bp downstream
Tssr82318	transcription start site region 82318			1760 bp downstream
Tssr82319	transcription start site region 82319			1793 bp downstream
Tssr82320	transcription start site region 82320			1820 bp downstream
Tssr82321	transcription start site region 82321			1832 bp downstream