rs264491162 SNP Detail

Summary

• ID
  rs264491162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85820872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGGTTA AGAGCACTGG
  CTGCTTTTCC AAAGGTCCTG AGTTCAATTC CCAGCAACCA CATGGTGGCT CACAACCATC
  TGAAATGAGA TCTGGTGCCC TCTTCTGGCC TACAGGCTTA CATACAGGCA GGCCACTGCA
  TACATAATGC ATGAATATAA AAGAAAAAAG GGGAGGAGAG GCCGCGACCG GGCAGAGACC
  R
  CCGGAGTCGC CGCCGGAGAG GAGTCGACTC GCCAGCCGCC GCCAGCGAGG CCCGCCCACC
  CGTTTGTCTG GCCCTCTGCC CCGTTCACCA TGCAGCCTGC TTCTGCAAAG TGGTACGATC
  GAAGGGACTA TGTATTCATT GAATTTTGTG TTGAAGACAG TAAAGATGTT AATGTAAACT
  TTGAAAAATC CAAACTTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	KK/HlJ	LEWES/EiJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	ZALENDE/EiJ
ss369073224	MGP_WTSI_6_85793884	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	KK/HlJ	LEWES/EiJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	ZALENDE/EiJ
rs264491162					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369073224	MGP_WTSI_6_85793884	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85820872 () rs orientation: forward

Symbol	Name	Function Class
Gm67358	predicted gene, 67358	1997 bp downstream
Gm68507	predicted gene, 68507	within coordinates
Ptges3-ps	prostaglandin E synthase 3, pseudogene	90 bp upstream
Rr633275	regulatory region 633275	88 bp distal