rs264448911 SNP Detail

Summary

• ID
  rs264448911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133250358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGACGTG ACTGGCATGC
  GAGCGGAGCG GGCGCGAGCG CGGGAGCGGG CCGTGCGCTC GCTCCCTCGC GGAGGCGCGG
  CGGGACCCGG GGCCGTGCGC TCGCTCCCTC GCGGGGACGC GGCGGGACCC GGGGCCGTGT
  GCTCGCTCCC TCGCGGAGGC GCGGCGGGAC CCGGGGCCGT GCGTTCGCTC CCTCGCGGGG
  R
  CGCGGCGGGA CCCGGGGCCG TGCGCTCGCT CCCTCGCGGG GGCGCGGCGA GTCCCGGCTG
  CGCGCTCACT CCCTCGCGGG GGGCTAGGGG ACCTCCTCTG CTCGGCTCCT CCCCGGCCTT
  TCCTGAGCCC CGGGTGCCGC CGGCCGCACA CCCACGCGTG GGCGGCCTCC GCGCCTCTGT
  CTCCCGCGGG GGCCGCGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359791688	MGP_WTSI_3_133207561	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264448911					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359791688	MGP_WTSI_3_133207561	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133250358 () rs orientation: forward

Symbol	Name	Function Class
Gm42567	predicted gene 42567	within coordinates
Rr585564	regulatory region 585564	988 bp distal
Rr585565	regulatory region 585565	240 bp distal
Rr585566	regulatory region 585566	962 bp distal
Rr585567	regulatory region 585567	within coordinates
Rr585568	regulatory region 585568	489 bp proximal
Tet2	tet methylcytosine dioxygenase 2	Intron
Tssr35764	transcription start site region 35764	333 bp upstream
Tssr35765	transcription start site region 35765	284 bp upstream
Tssr35766	transcription start site region 35766	185 bp upstream
Tssr35767	transcription start site region 35767	53 bp downstream
Tssr35768	transcription start site region 35768	532 bp downstream
Tssr35769	transcription start site region 35769	720 bp downstream