rs264362458 SNP Detail

Summary

• ID
  rs264362458
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51114445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTCAGG AATGTGCTCT
  CAATTTTCAC TGGGCAAATC CCTCTTTCCC CTGTAAGTGC TGGGGCATAT GGGACAGGTA
  AATGTCTTAA TGGGTAGCAT AAAAGTAACA TTTTTTTCTG GCCCTCGTGG GTGACTCGAA
  TGTAGGGCTT CCGATTCTGT TTTTCACTAG AGCAAATGTT TAGTGCATGG GGAAGGGGGG
  B
  GGGGGGGGGA GCCCACCCTT CAACCTGGCT GCCCACACAG CTCAGTCATG GCTGCATCAT
  TTCGCAGACT CAAGTCACTG CTTTCTGGTA CATCCATCCT TGGGGAAACA AAGTTTTATT
  AAATTTCTCT CCCGCAGGTC TTGGTCTCCT ACCTGTCTCC TGTATTATAG ACACTGGACA
  TGTGCCTTTC TAAGACCTAA                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss357924997	MGP_WTSI_3_51010946	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	G	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs264362458					SNP	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	G	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357924997	MGP_WTSI_3_51010946	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51114445 () rs orientation: forward

Symbol	Name	Function Class
Rr576240	regulatory region 576240	75 bp distal