rs264296781 SNP Detail

Summary

• ID
  rs264296781
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117148829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCTGTTA CCACCACCAC
  CACGGGGACA CTGATATGCC ATCAGACATG GGTTTCAAAG GATACTTTTG TTCCCCAGAG
  CCCTGATGTC CTCAGTGTTT CTCACTCTTG CTTTCCAAGC TGTTTCTTGC AGCACAGTGG
  GCCGCCTCTC TACAGAAAAA GCCATGGACT TGATGGAGGT CAGCCCTCAG CTGACAGTTG
  K
  GTCTGTCTTG TCAGTTTCAA GGTTCTGGTG TCCAAAGTTA ATCCTTTCTC ACATAGAAAA
  AAAAATTACA AGACCCGGAT GGCACGGGGG GGGGGGGGGT TCAGTTTTAC TCACTTGCAC
  TCACTTGCTC AGAGGTCATT TTTGTTTTAG AGTTTTAGAG TTTGCTGGAG TGTGATGGTA
  GCTGCCAGTA TTTGATTTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369791542	MGP_WTSI_6_117121886	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264296781					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369791542	MGP_WTSI_6_117121886	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117148829 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637287	regulatory region 637287	1245 bp distal
Rr637288	regulatory region 637288	563 bp proximal
Rr637289	regulatory region 637289	1998 bp proximal
Tssr58391	transcription start site region 58391	1863 bp downstream
Tssr58392	transcription start site region 58392	381 bp downstream
Tssr58393	transcription start site region 58393	362 bp downstream
Tssr58394	transcription start site region 58394	322 bp downstream
Tssr58395	transcription start site region 58395	1624 bp upstream
Tssr58396	transcription start site region 58396	1640 bp upstream
Tssr58397	transcription start site region 58397	1678 bp upstream
Tssr58398	transcription start site region 58398	1704 bp upstream
Tssr58399	transcription start site region 58399	1726 bp upstream
Tssr58400	transcription start site region 58400	1754 bp upstream
Tssr58401	transcription start site region 58401	1790 bp upstream
Tssr58402	transcription start site region 58402	1821 bp upstream
Tssr58403	transcription start site region 58403	1839 bp upstream
Tssr58404	transcription start site region 58404	1858 bp upstream
Tssr58405	transcription start site region 58405	1900 bp upstream
Tssr58406	transcription start site region 58406	1930 bp upstream
Tssr58407	transcription start site region 58407	1961 bp upstream
Tssr62617	transcription start site region 62617	1688 bp downstream
Tssr62618	transcription start site region 62618	1710 bp downstream
Tssr62619	transcription start site region 62619	1746 bp downstream
Tssr62620	transcription start site region 62620	1789 bp downstream
Tssr62621	transcription start site region 62621	1855 bp downstream