rs264272140 SNP Detail

Summary

• ID
  rs264272140
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145573873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTTTAA AAAATGAGTT
  GGGCTGGAAA TATGGCTTAG CAGGTGGGAG CACTGACTGT TCTTCCAGAG GTTCTGAGTT
  CAATTCCCAG CAACCACATG GTGGATCACA ACTATTTCTT TTGGGATCTG ACATCCTCTT
  ATCTTGTGTC TGAAGAGAGT GACAGTGTAC ACACATACAT AAAAGAAATA ATGTTTTTTT
  W
  TAAATGGGTC AAAATAAGTC CTATCTGAAA ACTAAAAAGT TGTTCTGGGC TGGCGAATGG
  TTCCATTGGT AAAGAACCTG GCAAAACCTG ACTGCCTGAG GTTTGGATTC TCAGAACCTA
  TATAAAAGGC TGGATCCAGG TTAGAGAGAT GGCCTACTTG TTATGAGTAC CTGTTTCTCC
  TGCAGAGAAC CTTGGTCAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CAST/EiJ	CBA/J	CE/J	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss363599757	MGP_WTSI_4_145437206	EVA_MGPV3	EVA_MGPV3	f	SNP	A	T	T	A	A	A	T	T	T	A	A	A	A	T	T	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CAST/EiJ	CBA/J	CE/J	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs264272140					SNP	A	T	T	A	A	A	T	T	T	A	A	A	A	T	T	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363599757	MGP_WTSI_4_145437206	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145573873 () rs orientation: forward

Symbol	Name	Function Class
Gm13236	predicted gene 13236	1667 bp downstream
Rr604403	regulatory region 604403	822 bp proximal