rs264265693 SNP Detail

Summary

• ID
  rs264265693
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102112959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTGGAT AGTGGTGAGG
  ACTCTAATGT CCTTGAAGGG TTGAAATTCT AGTATTAGAA AGTGCAGAAC AGTTGGCAAC
  TGTTTTTGTG AATATTCTCA CCCTTCTTTC TTAGTCGTCA TAGAATCCAT GCCCAGAATG
  ACAGATCTAT AGCTGCCATG ACAAAATGCT CCCGCGAAGG CACGCACAGC GGGAAGTGCT
  R
  AATCTGCAGT TTGTTTGCAG GAATGCTGGG GGTGATTTGC CTTGCGAAAA TGCAGGCTCT
  TTGTGAAGTA GCCTTGTTTG GGAACCTGTA GCCTCAGGAA GTCCTTACTG TCTGCTTTTT
  CCTAACTCCT CTATATTCCA TTTTCTCCAC CATCCAGGCC ACGTCCTTCT AAGTACACCC
  AGATGTTCAC GGTGGCAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320854840	CHEV_3_102009566	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264265693					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102112959 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13625	CpG island 13625	630 bp distal
Gm16160	predicted gene 16160	within coordinates
Rr582207	regulatory region 582207	1691 bp distal
Rr582208	regulatory region 582208	1588 bp distal
Rr582209	regulatory region 582209	961 bp distal
Rr582210	regulatory region 582210	460 bp distal
Tssr34830	transcription start site region 34830	996 bp upstream
Vangl1	VANGL planar cell polarity 1	950 bp upstream