rs264265607 SNP Detail

Summary

• ID
  rs264265607
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:18070088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCATAGTA TGAAGGAAAT
  GATTGGAGGC TGTTGCGTTT GCTCAGACGA GAGAGGCTGG GCCGAGAACC CGCTGGTTTA
  TTGCGACGGG CACGGCTGCA GCGTCGCGGT GCATCAAGGT AAACACCCAA CCGCCCGCCG
  GGCCGAACCG GCCCGCTCCC AACCGTCACG GCTCCCCTCC CCCGCCCGGC GGCAACTGCC
  A
  CCGCCGCCCC TCCCCCGGCC CGCCCGCCGC CGCCGCCGCT CCGCCCCCGC CGCCGCCTCG
  CCCCGCCCCC CGCCCCGCCC GGCGCGCAGC CCGCGGGAGC CCGGCGTGGT CGCCGCGGGC
  TCGGGCTGTG CCCCGGCCTG TGGGAGAAAG TGCGTGTGGC CCGGGCTATC ACGTGACTCC
  GCGCTCACTC AAGTGTCATT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss353244163	MGP_WTSI_2_17986904	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs264265607					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353244163	MGP_WTSI_2_17986904	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18070088 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1810059C17Rik	RIKEN cDNA 1810059C17 gene			805 bp upstream
Cpgi11235	CpG island 11235			within coordinates
Mllt10	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10			Intron
				Noncoding-Transcript-Variant
Rr552295	regulatory region 552295			580 bp distal
Rr552296	regulatory region 552296			801 bp distal
Rr552297	regulatory region 552297			671 bp distal
Rr552298	regulatory region 552298			within coordinates
Tssr16361	transcription start site region 16361			1364 bp downstream
Tssr16362	transcription start site region 16362			947 bp downstream
Tssr16363	transcription start site region 16363			929 bp downstream
Tssr16364	transcription start site region 16364			869 bp downstream
Tssr16365	transcription start site region 16365			848 bp downstream
Tssr16366	transcription start site region 16366			633 bp downstream
Tssr16367	transcription start site region 16367			572 bp downstream
Tssr16368	transcription start site region 16368			555 bp downstream
Tssr16369	transcription start site region 16369			461 bp downstream