rs264258298 SNP Detail

Summary

• ID
  rs264258298
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73107657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTTTTCCT TCTCTTCGGT CATTTTCTCT
  CCCGGCTCAT CCATTTCTGC CTGGGACGCC CCGCACCCCC AGCCCCAAAG CGTCTTCGAG
  TTTGGGTCTG GTCTTAAGGA GAAGCTGTGG CAGAGTACGC TCATCCTGGG GGTTTGAGGC
  G
  GAGGCTCTGA GGTCTATAGG GCGTCCCGTG CGTCTAGGGT CTGCAGGCTG GAGGTGCGGA
  GGTGAGTGCG AGCTGGGGGT TCCTGAGGAA TGAGGGCGCC GGGACGTCGG TCCCAGGCAG
  CTTTGTTTCT TGTTGATAAT AAAGGCAGAT                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320344751	CHEV_2_73115370	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264258298					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73107657 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr406574	regulatory region 406574			129 bp distal
Rr559121	regulatory region 559121			within coordinates
Rr559122	regulatory region 559122			1251 bp proximal
Rr559123	regulatory region 559123			1333 bp proximal
Sp9	trans-acting transcription factor 9			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant