rs264236114 SNP Detail

Summary

• ID
  rs264236114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152049834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGTGCTG GGATTAAAGG
  TGTGCGCCAC CACTGCCCGG CCCTGCCTCA GAAACTTACT CACAGTCAAC CCCCTGCCTC
  ACACACTCAC TCAGCGTCAT CATGCTGCCT CACACAGTCA CTTAGCGTCA TCCCCCTGCC
  TTACACATTC ATTCGTGGTC ATCCCCCTGC CTCTGAAACT CAATCACAGT CATTCCCCTG
  Y
  CTCAGAAACT CCCTCACAGT CATCCCCCTG CCTCAGAAAC TTTTTTTTTT TTTTTTTGGT
  TTTTTAAGAC AGGGTTTCTC TGTGTAGCCC TGGCTGTCCT GGAACTCACT CTGTAGACCA
  GGCTGGCCTT GAACTCAGAA ATCTACCCGC CTCTGCCTCC CAAGTGCTGG GATTAAAGGT
  GTGCGCCACC ACTGCCCGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss360264476	MGP_WTSI_3_152007161	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs264236114					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360264476	MGP_WTSI_3_152007161	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152049834 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13948	CpG island 13948	1953 bp proximal
Rr587533	regulatory region 587533	453 bp distal
Rr587534	regulatory region 587534	1791 bp proximal