rs264191984 SNP Detail

Summary

• ID
  rs264191984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163379230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGACCAGG GACTCAGGGG
  GAAGCTTAGA ATTCAGGGCA TGTGGAGATC TTTAGTCTCA GTCCCCAACT CAGCCCAGAA
  GGACAAGTCT GGAGGACATT TGATCAATAT ATATATATAT ATATATATAT ATACATATAT
  ATATATATAT ACATACATAC ATATATAGTT CAGATCCCCA ATGACTCTTT GGGGGTACTG
  Y
  AAGGCTTATC AGCCATCTCA TTTTCACTTT GCGGTTGGGG AAACTGAGTC AGAGAGAGGC
  AAGTGAGCCA TTTAAGTGAG CCATTTAAAG TCAGTAAACT GAAGCAGGTG AAGAATTCAG
  AGGGGACCTC ACAGTGATCT AAACAGAGCA CTGTTAAAAG AAACAAGACA AAACCCGCCA
  TCACCTCTGT CTTGAACTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320603577	CHEV_2_163363046	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264191984					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163379230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12637	CpG island 12637	1945 bp distal
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569400	regulatory region 569400	1625 bp distal
Rr569403	regulatory region 569403	1291 bp distal
Rr569404	regulatory region 569404	1937 bp proximal