rs264156509 SNP Detail

Summary

• ID
  rs264156509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76867858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAACGTG CCATGAGGCC
  CGCCATTGCT TTCCACATCT CTGGCCAGAG AAGCACTCTA GCTTCCTGAT TCCCTTGTAT
  AGCAACTAGG TGGCCAGCAC CTTTGCATGT ACCAAGAAGG CCCAAGTCCA GAGGGGTGTG
  GCCCCCATGG GCTGGGGAGG AGCCGTGCTG GTGTGGAGAC TGGGTTCTCA CACCTGGGAC
  Y
  CCATTCGTAT AGATGACCAT ACCTATAGTC TAACCTCCCG GCACCCCACC ACCTTGGGAA
  TCTATTAAAC CAGAGTTGCT GGTCGGCCAT TCCTCTTTGG ACCCATGCCC CTCTCCATTC
  GTTCTACTTT GCTGCCCTCG CAAGTACTCC GCCAAAACCC ATCAGGAGGA AAGAGGCTGG
  TTTCAGGGAG CCCCGCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380958638	MGP_WTSI_10_76494769	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264156509					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380958638	MGP_WTSI_10_76494769	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76867858 () rs orientation: forward

Symbol	Name	Function Class
Rr434375	regulatory region 434375	1959 bp distal
Rr434376	regulatory region 434376	170 bp proximal
Rr434377	regulatory region 434377	629 bp proximal
Rr434378	regulatory region 434378	698 bp proximal
Rr434379	regulatory region 434379	972 bp proximal
Rr434380	regulatory region 434380	1119 bp proximal
Rr434381	regulatory region 434381	1255 bp proximal
Slc19a1	solute carrier family 19 (folate transporter), member 1	245 bp upstream
Tssr94203	transcription start site region 94203	206 bp upstream
Tssr94204	transcription start site region 94204	234 bp upstream
Tssr94205	transcription start site region 94205	687 bp upstream
Tssr94206	transcription start site region 94206	1216 bp upstream
Tssr94207	transcription start site region 94207	1236 bp upstream
Tssr94208	transcription start site region 94208	1266 bp upstream
Tssr94209	transcription start site region 94209	1280 bp upstream