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rs264109047 SNP Detail
Summary
  • ID
    rs264109047
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:117149656 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTGTT TTTCCTAGAA GACAGTTCAC
Y
AGCTGGAGAG GAGTCGTCTC CCGTA                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss641191299 FVB_NJ_6_117122713 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C T C T C C C C C T C T C C C C T C T C T C C C T C T C T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs264109047 SNP C C C C C C C C C C C C C C C C C C C T C C C C C T C T C C C C C T C T C C C C T C T C T C C C T C T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss641191299 FVB_NJ_6_117122713 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:117149656 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cxcl12 C-X-C motif chemokine ligand 12 Intron
Rr637288 regulatory region 637288 27 bp distal
Rr637289 regulatory region 637289 1171 bp proximal
Rr637290 regulatory region 637290 1356 bp proximal
Rr637291 regulatory region 637291 1407 bp proximal
Tssr58392 transcription start site region 58392 1208 bp downstream
Tssr58393 transcription start site region 58393 1189 bp downstream
Tssr58394 transcription start site region 58394 1149 bp downstream
Tssr58395 transcription start site region 58395 797 bp upstream
Tssr58396 transcription start site region 58396 813 bp upstream
Tssr58397 transcription start site region 58397 851 bp upstream
Tssr58398 transcription start site region 58398 877 bp upstream
Tssr58399 transcription start site region 58399 899 bp upstream
Tssr58400 transcription start site region 58400 927 bp upstream
Tssr58401 transcription start site region 58401 963 bp upstream
Tssr58402 transcription start site region 58402 994 bp upstream
Tssr58403 transcription start site region 58403 1012 bp upstream
Tssr58404 transcription start site region 58404 1031 bp upstream
Tssr58405 transcription start site region 58405 1073 bp upstream
Tssr58406 transcription start site region 58406 1103 bp upstream
Tssr58407 transcription start site region 58407 1134 bp upstream
Tssr58408 transcription start site region 58408 1201 bp upstream
Tssr58409 transcription start site region 58409 1223 bp upstream
Tssr58410 transcription start site region 58410 1245 bp upstream
Tssr58411 transcription start site region 58411 1261 bp upstream
Tssr58412 transcription start site region 58412 1288 bp upstream
Tssr58413 transcription start site region 58413 1301 bp upstream
Tssr58414 transcription start site region 58414 1334 bp upstream
Tssr58415 transcription start site region 58415 1349 bp upstream
Tssr58416 transcription start site region 58416 1364 bp upstream
Tssr58417 transcription start site region 58417 1418 bp upstream
Tssr58418 transcription start site region 58418 1451 bp upstream
Tssr58419 transcription start site region 58419 1470 bp upstream
Tssr58420 transcription start site region 58420 1497 bp upstream
Tssr58421 transcription start site region 58421 1516 bp upstream
Tssr58422 transcription start site region 58422 1542 bp upstream
Tssr58423 transcription start site region 58423 1550 bp upstream
Tssr58424 transcription start site region 58424 1612 bp upstream
Tssr58425 transcription start site region 58425 1657 bp upstream
Tssr58426 transcription start site region 58426 1679 bp upstream
Tssr58427 transcription start site region 58427 1706 bp upstream
Tssr58428 transcription start site region 58428 1721 bp upstream
Tssr58429 transcription start site region 58429 1786 bp upstream
Tssr58430 transcription start site region 58430 1831 bp upstream
Tssr58431 transcription start site region 58431 1927 bp upstream
Tssr58432 transcription start site region 58432 2000 bp upstream
Tssr62617 transcription start site region 62617 861 bp downstream
Tssr62618 transcription start site region 62618 883 bp downstream
Tssr62619 transcription start site region 62619 919 bp downstream
Tssr62620 transcription start site region 62620 962 bp downstream
Tssr62621 transcription start site region 62621 1028 bp downstream
Tssr62622 transcription start site region 62622 1580 bp downstream
Tssr62623 transcription start site region 62623 1598 bp downstream
Tssr62624 transcription start site region 62624 1713 bp downstream
Tssr62625 transcription start site region 62625 1864 bp downstream
Tssr62626 transcription start site region 62626 1960 bp downstream
Tssr62627 transcription start site region 62627 1991 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory