rs264097472 SNP Detail

Summary

• ID
  rs264097472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119304025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCTTCACC CCTTCCCCAC TCCCCACCCC
  CACCCCACCT TCATCTGCAG GACCTGCACC CAGAACTAAC CTGTATTTTA CCTTATCCCC
  AGAAACAGAC CAAAGGGACA AGGCTGGGCT CAGCATGATC CCTGGACTCA GGTTGGAGAA
  Y
  GGGGTTGATA AGCTAGGACT GACCAACCTT TGAACCTCCC AAACCAGAAA CCTACAGTTT
  TGACTCCGAT GGGCTAATCA GATCAGCTAG CCTGGAACCC TTCAGAAATG CTAAATCTCA
  AGTGCCGCAC AGACAACAAA ATCCCAGGCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321927673	CHEV_6_119277082	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264097472					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119304025 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna2d4	calcium channel, voltage-dependent, alpha 2/delta subunit 4			Intron
				Noncoding-Transcript-Variant
Lrtm2	leucine-rich repeats and transmembrane domains 2			Intron
				Noncoding-Transcript-Variant
Rr637632	regulatory region 637632			1361 bp proximal