rs264062637 SNP Detail

Summary

• ID
  rs264062637
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117152669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTAACCA TCCTTCTCCT
  TAGCTCTCTA GAACAATCTC AGTTATCCCT AGGGATGCTC CCCAGCATCC AGAAAAGAGA
  AGTGGGATCA ATCATCCTGC CTTTCTCCCC CTCCTCTCTT GGAGGGCTGC CTGAGCCCGT
  GGCCTCCACC TCCCCTGCTT TGTATAATTT GAAATGCAGA TTTGTAGTGA AGGCAGAGTT
  Y
  ACCTCTGCAT TGAAAGGGAA GGCAGGCCCA GAGCTTCCTT CCCTGCCCTC TGAGATGTGC
  ATTTATGTCT CAGGATGGAT GAGCTTTGGT AGGAATGCTC AAAACCAGGA CCAGCCAGAC
  AAACTGGCAG TCCCTGTAAG CGGTTCCCGG GTCATAGGGT TAGGGCACCC CTGTTTAACT
  TTGGGGTGGG GAAAGTATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369791608	MGP_WTSI_6_117125726	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264062637					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369791608	MGP_WTSI_6_117125726	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117152669 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637289	regulatory region 637289	1384 bp distal
Rr637290	regulatory region 637290	1636 bp distal
Rr637291	regulatory region 637291	1585 bp distal
Rr637292	regulatory region 637292	635 bp proximal
Tssr58403	transcription start site region 58403	1988 bp downstream
Tssr58404	transcription start site region 58404	1977 bp downstream
Tssr58405	transcription start site region 58405	1921 bp downstream
Tssr58406	transcription start site region 58406	1892 bp downstream
Tssr58407	transcription start site region 58407	1870 bp downstream
Tssr58408	transcription start site region 58408	1807 bp downstream
Tssr58409	transcription start site region 58409	1779 bp downstream
Tssr58410	transcription start site region 58410	1761 bp downstream
Tssr58411	transcription start site region 58411	1730 bp downstream
Tssr58412	transcription start site region 58412	1718 bp downstream
Tssr58413	transcription start site region 58413	1694 bp downstream
Tssr58414	transcription start site region 58414	1672 bp downstream
Tssr58415	transcription start site region 58415	1654 bp downstream
Tssr58416	transcription start site region 58416	1636 bp downstream
Tssr58417	transcription start site region 58417	1582 bp downstream
Tssr58418	transcription start site region 58418	1556 bp downstream
Tssr58419	transcription start site region 58419	1536 bp downstream
Tssr58420	transcription start site region 58420	1501 bp downstream
Tssr58421	transcription start site region 58421	1477 bp downstream
Tssr58422	transcription start site region 58422	1464 bp downstream
Tssr58423	transcription start site region 58423	1443 bp downstream
Tssr58424	transcription start site region 58424	1384 bp downstream
Tssr58425	transcription start site region 58425	1345 bp downstream
Tssr58426	transcription start site region 58426	1327 bp downstream
Tssr58427	transcription start site region 58427	1293 bp downstream
Tssr58428	transcription start site region 58428	1282 bp downstream
Tssr58429	transcription start site region 58429	1204 bp downstream
Tssr58430	transcription start site region 58430	1173 bp downstream
Tssr58431	transcription start site region 58431	1074 bp downstream
Tssr58432	transcription start site region 58432	993 bp downstream
Tssr58433	transcription start site region 58433	968 bp downstream
Tssr58434	transcription start site region 58434	521 bp downstream
Tssr62621	transcription start site region 62621	1956 bp upstream
Tssr62622	transcription start site region 62622	1416 bp upstream
Tssr62623	transcription start site region 62623	1396 bp upstream
Tssr62624	transcription start site region 62624	1250 bp upstream
Tssr62625	transcription start site region 62625	1111 bp upstream
Tssr62626	transcription start site region 62626	1046 bp upstream
Tssr62627	transcription start site region 62627	1001 bp upstream
Tssr62628	transcription start site region 62628	869 bp upstream
Tssr62629	transcription start site region 62629	689 bp upstream