rs264055962 SNP Detail

Summary

• ID
  rs264055962
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69552935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTTGATG TCAGCCTGAT
  CTACGTAGAG AGCTCCAAGG CAGCCAAGGT ATATAGTAAG ACCCGGTCTC AATAAAATGT
  TAATCCCCGA CTACTGGGAT TAAAGGCATG CGCTACCACG TCCCGAAAGT AGCTCATCTT
  TGTTACTAGC TTTTGAGCGT TTGCTGAAGG TTCCTTGGAG GCAGAACGTC TCTCTAAATA
  M
  CTCGACAGAG GATGTCACTG TTTATAAAGT GATGCGCATC ATTTCGGGAG CGCTGTGACA
  TTCTGACGGA TCCACACCGA TCCAATCAAC TCTCAGAAAC CATCAAGCGA CCCGTCGGGA
  ACGTATTTTA AAAGGCAGAA GAGACCCTAC AAGCTCAAGG AGAAGATGCT GACGTCAGCC
  CGGGAACGCC GGGAGTCGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354377082	MGP_WTSI_2_69560648	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264055962					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354377082	MGP_WTSI_2_69560648	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69552935 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11715	CpG island 11715	2 bp proximal
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	Noncoding-Transcript-Variant
Rr397018	regulatory region 397018	16 bp upstream
Rr558457	regulatory region 558457	within coordinates
Rr558458	regulatory region 558458	182 bp proximal
Rr558459	regulatory region 558459	513 bp proximal
Tssr18132	transcription start site region 18132	206 bp upstream
Tssr18133	transcription start site region 18133	269 bp upstream
Tssr18134	transcription start site region 18134	448 bp upstream
Tssr18135	transcription start site region 18135	480 bp upstream
Tssr18136	transcription start site region 18136	657 bp upstream
Tssr24445	transcription start site region 24445	156 bp downstream