rs264006468 SNP Detail

Summary

• ID
  rs264006468
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87080858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTGTGTGT CAGCTTAGAA GAGGAATCTT CCTTCTTCAG
  AGGTGTCAAT CAGTGTCTTT GTGTATGTGT CTGTCTCCAT GTGTGTGTGT GTGTGGGTGG
  K
  GGGGGGGTCT CCTTAGGTGA GTAGTCTGTC TCCATGTCTC TGTTGGAAGC TATCTGTGTG
  TCTGATTTCT GTGCTCCAGT TCAGGCGAGG GGCTCGACA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NZW/LacJ	PL/J	RF/J	SEA/GnJ	SM/J	SPRET/EiJ
ss358770826	MGP_WTSI_3_86977473	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G	G	T	T	T	T	T	T	T	T	G	T	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NZW/LacJ	PL/J	RF/J	SEA/GnJ	SM/J	SPRET/EiJ
rs264006468					SNP	T	G	G	T	T	T	T	T	T	T	T	G	T	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358770826	MGP_WTSI_3_86977473	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87080858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13330	CpG island 13330	658 bp proximal
Gm64310	predicted gene, 64310	within coordinates
Kirrel1	kirre like nephrin family adhesion molecule 1	Intron
Rr579454	regulatory region 579454	885 bp distal
Rr579455	regulatory region 579455	116 bp proximal
Rr579456	regulatory region 579456	617 bp proximal
Rr579457	regulatory region 579457	989 bp proximal
Tssr33927	transcription start site region 33927	907 bp downstream
Tssr33928	transcription start site region 33928	967 bp downstream
Tssr33929	transcription start site region 33929	1081 bp downstream
Tssr33930	transcription start site region 33930	1106 bp downstream