rs263904243 SNP Detail

Summary

• ID
  rs263904243
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83433133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGGAGCCC CGCGGGCTAC
  AGAGAAGGGT GACCCGCGCC ACCAAGGGGT GCGGGGAGGG GGCGCGCTGG GGCGCAGGCC
  AGGCTGCGCG CGCCGCCACT GCCGCCGCCG CTCCGGCTCC TTTGTTCTGG GGCCTCGGCT
  GCTCCGCTCC CGCTGCACCG CAGCCCCCGC CCCGCCACCC CCACCCGGCA GCACCGCACG
  R
  CCACCCGGAG CTCCTTGCCG GGTCGCTGGC TACCCTGCTG CGCCCACCAT GGCCGTGCCA
  CGGTCCCCGA GCCGCCCCTC CCCCCACGCA CTGCCCCTCC CCCACCGCGG AGCCGGAAAG
  CCACCGGCTG CACCGACCTG CCCGCCGCCT CCGGGGCGGA GCGCACAAAG GGGCAAAGTT
  TCCCAGCCTG CCGCTGCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss369031904	MGP_WTSI_6_83406145	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	A	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs263904243					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	A	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369031904	MGP_WTSI_6_83406145	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83433133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17604	CpG island 17604	within coordinates
D6UmiJ2	DNA segment, Chr 6, University of Michigan Jones 2	1537 bp proximal
Gm67132	predicted gene, 67132	1060 bp downstream
Rr632868	regulatory region 632868	1767 bp distal
Rr632869	regulatory region 632869	231 bp proximal
Rr632870	regulatory region 632870	853 bp proximal
Rr632871	regulatory region 632871	1419 bp proximal
Tet3	tet methylcytosine dioxygenase 3	Intron
Tssr61651	transcription start site region 61651	679 bp upstream
Tssr61652	transcription start site region 61652	639 bp upstream
Tssr61653	transcription start site region 61653	225 bp downstream
Tssr61654	transcription start site region 61654	255 bp downstream
Tssr61655	transcription start site region 61655	276 bp downstream
Tssr61656	transcription start site region 61656	325 bp downstream
Tssr61657	transcription start site region 61657	380 bp downstream
Tssr61658	transcription start site region 61658	638 bp downstream
Tssr61659	transcription start site region 61659	661 bp downstream
Tssr61660	transcription start site region 61660	1029 bp downstream
Tssr61661	transcription start site region 61661	1372 bp downstream