rs263854335 SNP Detail

Summary

• ID
  rs263854335
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98132183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGGGGT GCTTGGATGC
  AGGGCGGGTC TCTTCCATCT CAGAGGATAC TGATGATGGA AGCTTTTTTG AAAATCAATC
  TGTCTCTGTC TCTTTTTCTC TCTCAATTTC TCTCTCTTTC TCTAGTTTCT GTCTCTGTGT
  CTCTCTGTCT CCCTCCCCCC CCAAACCCCC CCCCCCCGCC ATTCCACCCC TGTCCCTCCC
  M
  CCTCTCTGTC TTCCCACCCA CCCTCCCCGC CCCCCTTCTC AGAAGCAAAT AGAGCCTGTT
  TCCTGCCGAC CTGAAGCGCA GTGATGCAGG CTGGGATCTC TTGCAAGTTT TCCGCTGTGG
  GGTGCCGCAA CAGCTGTGAC CCTTTCTTGA TTTTGATGTA GACTTCAAGG GCGCCGTCCC
  CAGCAGGGGA ACATTTTTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CE/J	CZECHII/EiJ	DBA/2J	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ
ss362539267	MGP_WTSI_4_97910637	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	C	C	C	C	C	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CE/J	CZECHII/EiJ	DBA/2J	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ
rs263854335					SNP	C	A	C	C	C	C	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362539267	MGP_WTSI_4_97910637	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98132183 () rs orientation: forward

Symbol	Name	Function Class
Gm70434	predicted gene, 70434	within coordinates
Rr406792	regulatory region 406792	within coordinates
Rr595714	regulatory region 595714	within coordinates
Rr595715	regulatory region 595715	230 bp distal
Rr595716	regulatory region 595716	312 bp proximal