rs263812000 SNP Detail

Summary

• ID
  rs263812000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:99049953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCCACA ACCTACTTAC
  AGGAAAGAAT AAAAACAATT CAACTCCAGC TGGGCCTGCA CAAAAGCCAG GAAGCTTTCT
  TGGATCTGGG AGTCTTGTGG GAGCAGCTAG CAGCTTAGGT GCTTTCTGGC AAGTTTTGAT
  TCTGCTCTTG CTGCAGAAAC CGTAAGCTGC CCGACACTGA CGATATTCAG TAATCGTTGC
  Y
  AAGTTTAATT CCAGTTGGGT TGTTTGGAGG GCTTGAGTGA CCACGGGAGA AACATTTTTA
  TAAAGCTCCT TGTTTGGTGC ACTGGCAATT TGCTCAGGAA ATGTGAGTCA GTCTCCCTCC
  CTCTGTCTCA GAAAAAAAAT AGCTTGATTT CTCTCCTCTA AACTGGAGGC TAGCCCATAA
  ATATGACCAT CACACTTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321222992	CHEV_4_98828407	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263812000					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:99049953 () rs orientation: forward

Symbol	Name	Function Class
Gm12681	predicted gene 12681	74 bp upstream
Rr376904	regulatory region 376904	within coordinates
Rr595834	regulatory region 595834	947 bp distal
Rr595835	regulatory region 595835	85 bp distal
Rr595836	regulatory region 595836	within coordinates
Rr595837	regulatory region 595837	1862 bp proximal