rs263768775 SNP Detail

Summary

• ID
  rs263768775
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:112938815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCTCCT TCAGGAGAAA
  CAAAAACAAA ACTTCCCAAA CCTCCAAAAC TAGAGTCATC TTGTCAAGGG ATAGGCATGG
  AAGGGGTAGC TTTCACTTTT TTTCTTTTTC TTTTTTCTTC TTTTTTTTCC TGTATCGTGT
  CTGTCACTTG TAGACCATTG GGTCAGGCAA TTTACCTAGT TGTAAGCTGT TGGAAGTTTG
  K
  GTGGTGGGAC TCTGGTTTAA GTAACTGACA TAGTCCTGGC GAGTTTTCAA GGCGACTGAA
  CTAGTGGCTT TTGCATCCTA GATACAAATC AGCATAATGG TTCCTCAGAG ATAGGAAATT
  TCCCCAGGCT TTAACTTAAT CTCGCTGTTC TAGACTATTC CTCTCTCTTG CTTCCAGCCT
  GACCATTTAG GTGCCTATAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390009014	MGP_WTSI_13_113592489	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263768775					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390009014	MGP_WTSI_13_113592489	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112938815 () rs orientation: forward

Symbol	Name	Function Class
1700125C05Rik	RIKEN cDNA 1700125C05 gene	1552 bp upstream
Gm61455	predicted gene, 61455	within coordinates
Gm61456	predicted gene, 61456	948 bp upstream
Plpp1	phospholipid phosphatase 1	Intron
Rr389097	regulatory region 389097	1533 bp downstream
Rr486433	regulatory region 486433	1408 bp distal
Rr486434	regulatory region 486434	907 bp distal
Rr486435	regulatory region 486435	268 bp distal
Tssr4178	transcription start site region 4178	1431 bp downstream
Tssr121147	transcription start site region 121147	1500 bp downstream
Tssr121148	transcription start site region 121148	1459 bp downstream
Tssr121149	transcription start site region 121149	1405 bp downstream
Tssr121150	transcription start site region 121150	1378 bp downstream
Tssr121151	transcription start site region 121151	1340 bp downstream
Tssr121152	transcription start site region 121152	1316 bp downstream
Tssr121153	transcription start site region 121153	1098 bp downstream
Tssr124079	transcription start site region 124079	1693 bp upstream