rs263757750 SNP Detail

Summary

• ID
  rs263757750
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62417944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATCCTCTA GTCGTCGGTC
  AAAGTTGGAG ACCACTGCCA GCTTCAGACC CCGCTTACGG CACCCCTTCA GGGTCATCTC
  AGCCCCCTCC AACACCTGCC AGGTGAAAGG GCTGCTGAAG TCTTCGTATA GCTGGTCAGC
  AACTGGAGTC ATGGCCTGGG CATCTGGGAC CCCTGCTAGG CGGAAGGTGT GTAGGACCAC
  R
  TCCTTCCACC ATTGACGGGA AGTAAGGCCA CGGCTCAGGC CATAGTTGGG GAAGTTGTGG
  CTCTGAGCCC GGTATGCCTG CCTGAAGGCT TGTTCCACGG TTATGTCTTC CACCACCACT
  CCATGGGCCC GGGCCTTGCT GGCATATTCC TCCCCGACGG GTCGGCGGAG CTTGATCAGA
  GTATCCTTTA CATCCCACGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss361714240	MGP_WTSI_4_62160741	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs263757750					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361714240	MGP_WTSI_4_62160741	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62417944 () rs orientation: forward

Symbol	Name	Function Class
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3	Coding-Synonymous
Rr593324	regulatory region 593324	1055 bp proximal
Rr593325	regulatory region 593325	1725 bp proximal