rs263757595 SNP Detail

Summary

• ID
  rs263757595
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:139908319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAAGAAA GGTCTTGGTT
  CAATGGCCCC CAATAAACCT TCCCTTCCTC TCCTCGGTAT AATTAAGTTG AACTCGGAGG
  AATCCCTATG CCTTCTACTT CAAAACACCT CCAGTTTACA GCTACTCGCC CGCCTCTCCA
  GCATCTTCAC TGACTCAGTC CTAGCCACCT CTACACTGAC TGGATGCTAC ATGTCCCTCG
  S
  GACGCTAACC CGGGCTCTAA CAGACTCAGG GAAGCTCTGA CCCCACCGCG ACATCTGTCT
  GTGACACATC CCGGGCCCGC TGTGGACCTG GGACACGTGA GTTCCCTGTA GCCTGGGACT
  GCACAGCGCG CGAAGAGCTC CGAGAACTCC GCAGCCAAGG GAACTGGCGG CCCCCACGCG
  TGACCACAAC TCCGGGCCGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320528020	CHEV_2_139892135	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263757595					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139908319 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12337	CpG island 12337			within coordinates
Rr397340	regulatory region 397340			267 bp upstream
Rr566073	regulatory region 566073			within coordinates
Rr566074	regulatory region 566074			543 bp distal
Rr566075	regulatory region 566075			45 bp proximal
Rr566076	regulatory region 566076			351 bp proximal
Tasp1	taspase, threonine aspartase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr26542	transcription start site region 26542			552 bp upstream
Tssr26543	transcription start site region 26543			262 bp downstream