rs263749307 SNP Detail

Summary

• ID
  rs263749307
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85432970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCGAGGT GTTTTTAAAC
  GTTTTCTTCA GCCCTCCCAC CGAAACCGAA CGACGAAACA AATTTAAACC CCAGATTATC
  CTCGTCAACG CAGGAAAAAA GGCAAAACAA AAAAAAAAAA ACAAAAAAAA AACCAACCAA
  CCAAACCAAC AAACAAAAAC CCAGAAAACT ATCAAAAAGG AAAACAAACA AAAAAAAAAA
  M
  AAAAAAAAGG AAAACACTCA GCTTTCATCC CCGCTAAGGG CAGGGCAGGC CCAGTTCTTT
  TAGCGTCCCC AGAGCCGCGA GGACATTACA ACAAAAATAG AATTTTTTTT CTTAATCTCT
  TAACATACAA AGATAGGAAA ACTCTCTGAT GCATTGCACT TGGTTCAATA AAAAAAAAAA
  GGTTAATTTC CCCTATATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	SJL/J	SPRET/EiJ
ss375404565	MGP_WTSI_8_87230240	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	SJL/J	SPRET/EiJ
rs263749307					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375404565	MGP_WTSI_8_87230240	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85432970 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lyl1	lymphoblastomic leukemia 1			1401 bp downstream
Nfix	nuclear factor I/X			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr368567	regulatory region 368567			1715 bp downstream
Rr666588	regulatory region 666588			1734 bp distal
Tssr82117	transcription start site region 82117			1203 bp upstream
Tssr82118	transcription start site region 82118			1166 bp upstream
Tssr82119	transcription start site region 82119			1139 bp upstream
Tssr82120	transcription start site region 82120			1063 bp upstream
Tssr82121	transcription start site region 82121			514 bp upstream
Tssr82122	transcription start site region 82122			281 bp upstream
Tssr82123	transcription start site region 82123			132 bp upstream
Tssr82124	transcription start site region 82124			87 bp upstream
Tssr82125	transcription start site region 82125			13 bp upstream
Tssr82126	transcription start site region 82126			159 bp downstream