rs263652421 SNP Detail

Summary

• ID
  rs263652421
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54477738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACACATC TATTCTCTTT
  AGCCTTCCTC TTGCGATGAT GGACAGTAAC CAAAAGCAGT GTGGGGAGAA AAGAGTCCAT
  TTGACTTCCA TTTTCAGGTA ACGGGTTGTC ACTGACAGAA GTCAGGGTGG GAACTCAAGA
  AGAAGCAGTC AGGACCTTAG AGAAAGCAGT TTTTTTACTG GCTTTCTCCT CGGCTTCTCT
  M
  AGCTTGCTTT CTTGTACAGC CCAGACCACT TATCCAGGCA GGTGTAGCTA CTCCCACAGT
  GGGATGTACC CTTTAATATT AATTAGAAAT CTAGAAAATG CCCTTTAGAC AAACCCATAG
  GCCAATCCGA TCCAGGTAAC CTCAGCTAAG GTTCCCTCTT CCGGGACGAG TTTGAGTCAC
  GTTGACAATA AAAAACAACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320771955	CHEV_3_54374239	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263652421					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54477738 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	404 bp upstream
Rr576808	regulatory region 576808	1923 bp distal
Rr576809	regulatory region 576809	364 bp proximal
Tssr29130	transcription start site region 29130	400 bp downstream