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rs263604175 SNP Detail
Summary
  • ID
    rs263604175
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr8:124618449 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCGCAGCGGG CAGTGGCCGT
CTCTTAAAGG GGAAGATACT TTGCCAAGCA GCCAGGGACC AGGCAAGCCA CTTAGATCCC
CTATAAGGGA ACTGGCTATG ATTCAGAAGG GAAAACCACG GAGTTTGGGT GAGAAGACCT
AACTTTCTAA CTTCATTTCC TAAGGAGTTC ACCCAGTCTG TGAACAGTGA GAGGTGGAGA
Y
GGGTCCTTCG CCTGCCCACT GCCTACTCCC AGTAAATAAA GACCACACAC AGTTTATTGG
AGCAAAACAG AATGGCTGGC TTTAATGCTT CAAGTTTTCC ATTTCCTTTC CACAGGGCTT
TGTTTGAAAA ATAACAAAAT GAGGTAAAAC GAGTCAATCT ATGTACACGT CAAAAACAGG
CGCCGGCTGC AGTGGCGGCG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss376352932 MGP_WTSI_8_126415610 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263604175 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss376352932 MGP_WTSI_8_126415610 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:124618449 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Acta1 actin alpha 1, skeletal muscle 59 bp downstream
Rr672570 regulatory region 672570 1198 bp proximal
Rr672571 regulatory region 672571 1317 bp proximal
Tssr2730 transcription start site region 2730 81 bp downstream
Tssr79994 transcription start site region 79994 216 bp upstream
Tssr79995 transcription start site region 79995 333 bp upstream
Tssr79996 transcription start site region 79996 596 bp upstream
Tssr79997 transcription start site region 79997 943 bp upstream
Tssr79998 transcription start site region 79998 1159 bp upstream
Tssr79999 transcription start site region 79999 1230 bp upstream
Tssr80000 transcription start site region 80000 1514 bp upstream
Tssr80001 transcription start site region 80001 1551 bp upstream
Tssr80002 transcription start site region 80002 1913 bp upstream
Tssr83384 transcription start site region 83384 130 bp downstream
Tssr83385 transcription start site region 83385 153 bp downstream
Tssr83386 transcription start site region 83386 195 bp downstream
Tssr83387 transcription start site region 83387 214 bp downstream
Tssr83388 transcription start site region 83388 433 bp downstream
Tssr83389 transcription start site region 83389 551 bp downstream
Tssr83390 transcription start site region 83390 586 bp downstream
Tssr83391 transcription start site region 83391 678 bp downstream
Tssr83392 transcription start site region 83392 890 bp downstream
Tssr83393 transcription start site region 83393 916 bp downstream
Tssr83394 transcription start site region 83394 1178 bp downstream
Tssr83395 transcription start site region 83395 1212 bp downstream
Tssr83396 transcription start site region 83396 1246 bp downstream
Tssr83397 transcription start site region 83397 1301 bp downstream
Tssr83398 transcription start site region 83398 1460 bp downstream
Tssr83399 transcription start site region 83399 1493 bp downstream
Tssr83400 transcription start site region 83400 1528 bp downstream
Tssr83401 transcription start site region 83401 1547 bp downstream
Tssr83402 transcription start site region 83402 1571 bp downstream
Tssr83403 transcription start site region 83403 1732 bp downstream
Tssr83404 transcription start site region 83404 1749 bp downstream
Tssr83405 transcription start site region 83405 1886 bp downstream
Tssr83406 transcription start site region 83406 1925 bp downstream
Tssr83407 transcription start site region 83407 1997 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
01/28/2026
MGI 6.24 		The Jackson Laboratory