rs263526977 SNP Detail

Summary

• ID
  rs263526977
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78855010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATCCCGA GGCTCCACTG
  GAACAGAGGG GTAACTCCTG CAAGTCATCC TCTGACCTCC ACACACTGGC CATGGCACAC
  ACTGTGTGCA CAGTACCCAC ACACAAAAAA AGACATGCAA TGAGATTTCT TTCGGGAATA
  CTTTAGTGGA ATTAGTGACG GCACCTGTCA CCCTTGCCTT GTAAAGCACA ACACCTGTGG
  R
  AAAGGACACA AAATGCCATG AGAAACTTAC AGTGTTACAA GCTTTGGAAG TAGACCACAT
  GGGCGCCATA CTAAAGGGTG ATTTAGCTCA AAAAAGTGAG AAAAAAGACA CATTGAGGAA
  AATGGTCCAG CCTGTAAAAT GACGAAGGAT GAAGATTTGC TGTCTGCTAT TACTGGGGAA
  AACTGACTGA AGAACAGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss358569598	MGP_WTSI_3_78751625	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs263526977					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358569598	MGP_WTSI_3_78751625	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78855010 () rs orientation: forward

Symbol	Name	Function Class
Gm65474	predicted gene, 65474	543 bp upstream
Rr578444	regulatory region 578444	453 bp proximal
Rr578445	regulatory region 578445	554 bp proximal
Rr578446	regulatory region 578446	722 bp proximal
Rr578447	regulatory region 578447	1808 bp proximal
Rr578448	regulatory region 578448	1898 bp proximal