rs263497391 SNP Detail

Summary

• ID
  rs263497391
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75788525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTA CATGCACAGG GAGAAATGGA AAAGACTTAT TGGGGGTTAA
  GAGCACTGAC TGCTCTTCCC AAGGTCTTGA GTTCAGTTCC CAGCACCCAC GTGGCAGCTT
  GAAACTGTCT GGTGCCGTCT TCTGGTGTGC AGATGTACAT ACAGCAATAA CCCCCCCCAC
  M
  CACACACACA TAAATATTGC AACAGAAACG ACTATGTTCA CCCAAAATTC AAGAGACAAG
  TCATTTCATG TATGGGAGGA GCACTATGGT CGAGAAGCAC ATCTCATACT TAGAGTCAGT
  CCTAGCGATT CTGATTATTC CCATCCAGGT AGAAATCTTT GCCATTTATT GCAGTCAGCT
  AGCAGCACTG CTACTGCAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380934513	MGP_WTSI_10_75415436	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263497391					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380934513	MGP_WTSI_10_75415436	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75788525 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1738	CpG island 1738	1362 bp distal
Cpgi1739	CpG island 1739	1703 bp proximal
Gm5134	predicted gene 5134	1823 bp upstream
Gm40698	predicted gene, 40698	1159 bp downstream
Gm65908	predicted gene, 65908	1744 bp upstream
Rr402000	regulatory region 402000	836 bp downstream
Rr434189	regulatory region 434189	1776 bp distal
Rr434190	regulatory region 434190	1275 bp distal
Rr434191	regulatory region 434191	1584 bp distal
Rr434192	regulatory region 434192	907 bp distal
Rr434193	regulatory region 434193	689 bp distal
Rr434194	regulatory region 434194	1425 bp proximal
Rr434195	regulatory region 434195	1903 bp proximal
Tssr94163	transcription start site region 94163	1830 bp upstream