rs263497032 SNP Detail

Summary

• ID
  rs263497032
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152079807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGGACCGG AGTGCGGGGC
  GGCGCCGCCG CGGCGGCCAG GGACCCGCCC TCCCTCCCGG AGCAGATGGC GCGCGACGCC
  CGCCCGCGCA GGCCCCGGAA GGTGCGGGGC CCACCCGTGG GGTGCGGGAC GCCCGCGGGT
  CCCGGGTGGG TGTCCCGGCG CCACGCAGGC CCCGACGCCT CCCGCCCGCA GCTGCGACAC
  S
  GTGGACCCCT CGGGCCCCGC CCCGCCCCCG CCGCACACCC CGCACCGCGA CCCCTGCCCC
  GAGGCGCTGC GCGGGGGCCG CTCCCCGGAA GGAGGGGGAG GGGCGGCGCG GGAGACCGGC
  TCCGGAGTAC CGACCCCCCG GACGCGGGCG CCGTGGGGGC GGGGCGCGGC CTGCCCGGCG
  GAGGGGGCGG CGGGACCGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss363702608	MGP_WTSI_4_151369459	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs263497032					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363702608	MGP_WTSI_4_151369459	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152079807 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15382	CpG island 15382	within coordinates
Gm69399	predicted gene, 69399	783 bp upstream
Phf13	PHD finger protein 13	Intron
Rr398892	regulatory region 398892	838 bp upstream
Rr605702	regulatory region 605702	293 bp proximal
Rr605703	regulatory region 605703	794 bp proximal
Rr605704	regulatory region 605704	898 bp proximal
Rr605705	regulatory region 605705	1372 bp proximal
Tssr44799	transcription start site region 44799	763 bp downstream