rs263493882 SNP Detail

Summary

• ID
  rs263493882
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101193230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACATTTTG AAATCTTCCA AAAGCCCCAA TCCTAAACAC TTCTAATCTC AAACTCATTA
  AGTAAGTGAT ACACAACCTG CACTGGGTAA TCAGGCTTGG GGTGGGTCAG AGGACAATTT
  TCCAATGCTG CGTAATATAT AGTCGTATAT AGTGGGGACA GGTCCTCAAG TTGAGTCAGC
  R
  TATTGTGTGA CCTTGGCATT TGCATACAGT AGTGAAGCCA CCGCTGTTAG TCGGAGGGTA
  TGGGTTTCCT TTGAGGGGGG TAGGGAAAAT GTTGCCTATG GTGGTAACCG CGTAACTCTG
  TGACTATGCA GAAAGCTGTT GAACTGCGCA CGGCAAACGG GCAAACTGTG TGGTATGTGA
  ATTGTATACC AATGAGCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320851726	CHEV_3_101089837	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263493882					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101193230 () rs orientation: forward

Symbol	Name	Function Class
Cd2	CD2 antigen	Intron
Rr397889	regulatory region 397889	1955 bp upstream
Rr581991	regulatory region 581991	within coordinates
Tssr30894	transcription start site region 30894	1757 bp downstream
Tssr30895	transcription start site region 30895	651 bp upstream
Tssr30896	transcription start site region 30896	726 bp upstream
Tssr30897	transcription start site region 30897	761 bp upstream
Tssr34779	transcription start site region 34779	1945 bp upstream
Tssr34780	transcription start site region 34780	1632 bp downstream
Tssr34781	transcription start site region 34781	1927 bp downstream
Tssr34782	transcription start site region 34782	1968 bp downstream
Tssr34783	transcription start site region 34783	1983 bp downstream