rs263378109 SNP Detail

Summary

• ID
  rs263378109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149056224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGATCAT AGCACTGAGA
  GACAGAGGAT TAGGTTGGAC GATTAAGAGT TCAAAGCTAG CCTCTACCAC TCAGTGAGTT
  CGAGGTCAAC CTGGGCTTCT TGTGAGCTTG TCTCTAGACA CATCTGAACA TATACATTTA
  TACATATACA CCTGAATACA TATATACCTA TATGTGTATA CATATATATA TATATATATA
  Y
  ACACACATAT AACTTTTAAA CAACCAAAAC CTAAAAATAG CATATATGCA TAAAATAAGT
  ATGTTTTTTA TATATAATAT GTACATTCAT ATTATATATA GATACATATT TTACATATAT
  ATGTAAAATA CACACATATT GTGAAGGTAC AAAAGTTGCA CCAACATATT CAATGGGCTA
  AACACAATTA AACAAGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	LEWES/EiJ	ZALENDE/EiJ
ss360191484	MGP_WTSI_3_149013551	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	LEWES/EiJ	ZALENDE/EiJ
rs263378109					SNP	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360191484	MGP_WTSI_3_149013551	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149056224 () rs orientation: forward

Symbol	Name	Function Class
Gm30382	predicted gene, 30382	within coordinates
Rr587311	regulatory region 587311	1623 bp distal
Rr587312	regulatory region 587312	698 bp distal
Rr587313	regulatory region 587313	972 bp distal