rs263368778 SNP Detail

Summary

• ID
  rs263368778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116286754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTCAGTCT CTCTAACAGG ACACTCACCT
  TTGCTAGCTG TTCAGCAAAA TGTATAGCAG TCTGCGTGTG GAGTGTGACT GATCCTGTTT
  TTATTCTGGA AATTCCATTG GCTAGCGCCA TGAAAATAAT CAGCTATCAA AAAAGAACAA
  R
  GAAGAAAGAA AATCTCAAAA ATATGCTAAT ATTCAGATTT ACAAATTCTA CAACCACTCA
  CAGGAAAATG CTACTAGAAA TCAAAATAGC TTTTAAAAGA AATTAAAAGA ATAATTCCTA
  TTTTCTTTAT GTTTCTAGAA GCTTTACACA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895287	CHEV_3_116196023	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263368778					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116286754 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583727	regulatory region 583727			1978 bp distal
Rr583728	regulatory region 583728			751 bp distal
Rtca	RNA 3'-terminal phosphate cyclase			Intron
				Noncoding-Transcript-Variant