rs263275143 SNP Detail

Summary

• ID
  rs263275143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135622319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTAGCTTC AGGTACCTGC
  TTGGGTTCCT GCCTTGATGT CTCTCTCAAT AAGAAACTGT CACCTGCAAG CTGAAATAAA
  CACACACACA CACACACTTT TGATTTTCTG CTTTGTGATT TTTGAGGCAG GGTCTCTATT
  TGTAGCCCTG AATGTCCTAG AATTTGCTAT GTAGACCAAG CTGGCCTTGA ACTGCCTCTG
  Y
  CTCCCGAGTG CTGGAACTAA AGGTGTGTGT CATCATGCCC AGCTTCTGAA CTTGCTTTTG
  TCACAGTCAC AGAATGGAGC AGAACCAGGA GCCAGCAGCG TTCATTCATG TCATCTGCCA
  ACACCTGCAG GCATTTGCAT CTCAAAGCTC TGGGCGAGAG GGAGGAGGCA TGAGGCACAC
  ACATAGCCTG GCACATGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363377931	MGP_WTSI_4_135450923	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263275143					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363377931	MGP_WTSI_4_135450923	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135622319 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	386 bp upstream
Rr602181	regulatory region 602181	1859 bp distal
Rr602182	regulatory region 602182	1543 bp distal
Rr602183	regulatory region 602183	within coordinates
Rr602184	regulatory region 602184	397 bp proximal
Rr602185	regulatory region 602185	963 bp proximal
Rr602186	regulatory region 602186	1864 bp proximal
Rr602187	regulatory region 602187	1987 bp proximal
Tssr39650	transcription start site region 39650	172 bp upstream
Tssr39651	transcription start site region 39651	376 bp upstream
Tssr39652	transcription start site region 39652	406 bp upstream