rs263218435 SNP Detail

Summary

• ID
  rs263218435
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105611866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTAGTCCT AGTCCTCAAT
  CCTAAAACTG CGTTCTTCCT TTATAATAGA CAATGAATGC ACTTGACTGG GGGCTTTGCC
  AGTTCCATGC CCCACAGAAC CCAGAACCTA ATCAAGACCT CTGCGAGTCT CCCAGTAGTT
  GCTGCTGTCT GCAAGGCCGG TGACAGACTT TCTCGGGTCG CCAGGCCCGA GCACCCCCCC
  Y
  CCCCGACCGC TCTTCCCATT GGCCGAAGAT ACCCCTTCTG AGTTCTCATT GGCTGCTGCA
  CTTTTCCTCC GCCCCTATCC CGGGCATTGA GCGGCAGCAG CGGGGAACGC CGCTCTAAGT
  CCCCACGCTG GAGCTGAGGC TCGGCTCAGC GCGGATAAGG GCGCGGAGCG CACTGAGAAC
  CCTACTTTCT CGTGAGCCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359116347	MGP_WTSI_3_105507468	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	C	T	C	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263218435					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	C	T	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359116347	MGP_WTSI_3_105507468	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105611866 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13661	CpG island 13661	within coordinates
Inka2	inka box actin regulator 2	49 bp upstream
Rr367522	regulatory region 367522	within coordinates
Rr582756	regulatory region 582756	within coordinates
Rr582757	regulatory region 582757	418 bp proximal
Rr582758	regulatory region 582758	919 bp proximal
Rr582759	regulatory region 582759	1923 bp proximal
Tssr31079	transcription start site region 31079	107 bp upstream
Tssr31080	transcription start site region 31080	138 bp upstream