rs263144039 SNP Detail

Summary

• ID
  rs263144039
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138230872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGCAAGC TAGGCAAACA
  TTCTACCCCT GAGTTATACC TGTAGCCCAA AATATGAGTC TTCACTGACA ACAGAGGAAG
  AAGGTTAAAA AAAAAAAAAC AATCAAATGT CATTTTAAAC AAAAACTTTA TATTGGTGGT
  TTTCAGGCTT GTCAGGATAC TTTCTTGCCA ATGGATTGGT TTGTGCTGTA ACCAACCCTG
  M
  AGCTCAAAAC AGGATATTTA GGTTGTCTTT TTCCTTTCTT TGGATAGAGA TTCTCCTGTT
  TCTTTGGGTG GCCTAGAACT TGCCATGTCA CTGAATTTAA AGTCCTGATC CTCCAGCATG
  CTGGGTTTAT GTGGTGTTGG GGGGAATCTA GGCTGGATGA ACACTCTATC AACTGAGCTA
  CAACTCAGCA CCCTAATGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359912446	MGP_WTSI_3_138188075	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263144039					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359912446	MGP_WTSI_3_138188075	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138230872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13876	CpG island 13876	1093 bp proximal
Eif4e	eukaryotic translation initiation factor 4E	1080 bp upstream
Gm64814	predicted gene, 64814	within coordinates
Mir1956	microRNA 1956	1310 bp upstream
Rr398072	regulatory region 398072	1817 bp upstream
Rr586156	regulatory region 586156	780 bp proximal
Rr586157	regulatory region 586157	1127 bp proximal
Rr586158	regulatory region 586158	1684 bp proximal
Rr586159	regulatory region 586159	1793 bp proximal
Tssr31989	transcription start site region 31989	1063 bp upstream
Tssr31990	transcription start site region 31990	1307 bp upstream
Tssr31991	transcription start site region 31991	1327 bp upstream
Tssr31992	transcription start site region 31992	1364 bp upstream
Tssr31993	transcription start site region 31993	1412 bp upstream
Tssr31994	transcription start site region 31994	1451 bp upstream
Tssr31995	transcription start site region 31995	1509 bp upstream
Tssr35898	transcription start site region 35898	1116 bp downstream
Tssr35899	transcription start site region 35899	1832 bp downstream
Tssr35900	transcription start site region 35900	1856 bp downstream