rs263115470 SNP Detail

Summary

• ID
  rs263115470
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145798215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAGCCCTC CGCTATTTAA CTAGCAACAT
  ATTCAGAACC AAATGAATGA ACACCGTAAT CCCTTCTCCT GTCTCTTTGA TTTAGCCGCG
  TGGAAAACGA TGCTGTAATC TGCCCTTCTA CTCAGACACT AATTAAGGAA GTTACTCTTC
  Y
  CTGTCTTTCA TTATGTTGGA AACAAAGCAA AGCTGCTACT GGACACACCT TTAAAAACTA
  CAGTGTGCTC AATTAATCTT CGGTGGTGGA CGTGAGATGT TCCCGGCTTA GAAAGACTGG
  CTTGGCCTTG GAGCGGTGGT GGTAGAGGGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320539017	CHEV_2_145782031	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263115470					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145798215 () rs orientation: forward

Symbol	Name	Function Class
Cfap61	cilia and flagella associated protein 61	Intron
Rr397368	regulatory region 397368	1172 bp upstream
Rr566613	regulatory region 566613	723 bp proximal
Rr566614	regulatory region 566614	1072 bp proximal
Rr566615	regulatory region 566615	1328 bp proximal
Rr566616	regulatory region 566616	1747 bp proximal