rs263032509 SNP Detail

Summary

• ID
  rs263032509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148225935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA AAAAGAAAAA AAAAAAAAAA
  R
  AAAGAAAAAA GGGAAAAAAC CAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss363608908	MGP_WTSI_4_147515587	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	A	G	G	G	A	A	G	G	G	G	A	A	A	G	A	A	G	A	G	G	G	A	A	A	A	A	A	A	A	G	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs263032509					SNP	A	G	A	G	G	G	A	A	G	G	G	G	A	A	A	G	A	A	G	A	G	G	G	A	A	A	A	A	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363608908	MGP_WTSI_4_147515587	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148225935 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			415 bp distal
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr398855	regulatory region 398855			893 bp downstream
Rr604600	regulatory region 604600			1820 bp distal
Rr604601	regulatory region 604601			1286 bp distal
Rr604602	regulatory region 604602			1465 bp distal
Rr604603	regulatory region 604603			1252 bp distal
Rr604604	regulatory region 604604			725 bp distal
Tssr40254	transcription start site region 40254			971 bp downstream
Tssr40255	transcription start site region 40255			926 bp downstream
Tssr40256	transcription start site region 40256			780 bp downstream
Tssr40257	transcription start site region 40257			711 bp downstream
Tssr40258	transcription start site region 40258			704 bp downstream
Tssr40259	transcription start site region 40259			688 bp downstream
Tssr40260	transcription start site region 40260			667 bp downstream
Tssr40261	transcription start site region 40261			470 bp downstream