rs262975461 SNP Detail

Summary

• ID
  rs262975461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135898341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGACTAAAG AGGCCTGTGT ATTCCAGATC
  AAGTCTGATA TAGCAACAGC TGTCGATTCT CATGGACCAA GCTCTGTGCC GAAGGCTTTG
  CATATACTGT GCCATGAGAT TTCTCTGTGA CTCCGACATA AGGAATGAGA GAGAGAGAGA
  R
  AAAAAAAAAA GACCCAGAGA ATGGAGAAGA AATCTTGTCA AACAGCTTTC ACAAAAGGGT
  TAGGGGACTG GATGTGAATT AAGAATGTCG AAGAGAAAGC CTGGGCTACC TGGTTTGTGA
  TGATCTGATC AGGTCTTAAC ACGGGGACTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321354358	CHEV_4_135726945	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262975461					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135898341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	923 bp proximal
E2f2	E2F transcription factor 2	1364 bp upstream
Rr367754	regulatory region 367754	1038 bp upstream
Rr602302	regulatory region 602302	874 bp proximal
Tssr39670	transcription start site region 39670	1236 bp upstream
Tssr39671	transcription start site region 39671	1337 bp upstream
Tssr39672	transcription start site region 39672	1366 bp upstream
Tssr39673	transcription start site region 39673	1398 bp upstream
Tssr39674	transcription start site region 39674	1528 bp upstream
Tssr39675	transcription start site region 39675	1636 bp upstream
Tssr39676	transcription start site region 39676	1820 bp upstream
Tssr39677	transcription start site region 39677	1915 bp upstream
Tssr44029	transcription start site region 44029	1288 bp downstream
Tssr44030	transcription start site region 44030	1571 bp downstream