rs262967412 SNP Detail

Summary

• ID
  rs262967412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67513540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAACTAT AAATGAGTAT
  TTACAAAAAC AAAATGTTGC AGCATCTGAA GACAGGCTAG TTAAAACAAT TCTATTGCTA
  CATCACCTGC ACAGCACAAT CCAGTTGTCA TGGTGTGCCA CATATGAAAA GTCCTATTGA
  ACAATGCATA TGCCTGTACT TGTGTAAGAT AAATGAAAAG AAAAAAAATT GTAGAGTAAG
  Y
  CAGTCCACTA GGAGAGATGT ACAATTTGAT TCTAAGAGAG GCAATTTTTT ATTTTCTTTC
  CCTGTATTGA ATGATATAAC GAGAGAAGGG AGCCTGTGAG AAACTGTGCT TCTTTAATAG
  GATGAAGGAG CGACACTCTC TTTTAGAATC TAGAGAAAGT CCACCGCTCA AAGCTGTGGT
  AAAATTAACA ATAATTAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812339	CHEV_6_67486550	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262967412					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67513540 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	680 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	1744 bp distal
Rr631669	regulatory region 631669	1301 bp distal
Rr631670	regulatory region 631670	750 bp distal
Rr631671	regulatory region 631671	480 bp distal
Rr631672	regulatory region 631672	577 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	760 bp upstream
Tssr1872	transcription start site region 1872	1775 bp upstream
Tssr61255	transcription start site region 61255	1811 bp upstream
Tssr61256	transcription start site region 61256	1330 bp upstream
Tssr61257	transcription start site region 61257	859 bp upstream
Tssr61258	transcription start site region 61258	754 bp upstream
Tssr61259	transcription start site region 61259	686 bp upstream