rs262958542 SNP Detail

Summary

• ID
  rs262958542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58434133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGGTTAG GTTTCATGCT
  GAAGATGTGG CTTAAGGTGG CGACAGTGAG CAGGATAATG ATAGTCTAAT GTTTTCGATT
  GAAACAGCTG TGAGACAGTA TTTAAGAAGT AGAACATGAG AAGACGCTAG GAATTTAAAG
  CTGACACATA TTGTGGTGCT TAAACAACAA CAACAAACTT GGACAACACT GGGAAAGGTG
  Y
  TATACTATGT TATGGCTTGG GTATGTAAGT TTGAATAAAC AAAAGATTCA AGTAGAAAAG
  AAGTGGGAAA GAAAAAAATC GTTGATAACA ATGTAAGAAG AAAGATAGCA TCATTAGGAC
  GAATGTCTTA TTTTTGAGAA TTGGAAGTTA TGTCCTCCTG AGACACGGCA AAGCTTTTAT
  ACTTCTGCCA GTCTAGGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358099870	MGP_WTSI_3_58330634	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262958542					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358099870	MGP_WTSI_3_58330634	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58434133 () rs orientation: forward

Symbol	Name	Function Class
6720482G16Rik	RIKEN cDNA 6720482G16 gene	218 bp upstream
Cpgi13201	CpG island 13201	440 bp distal
Eif2a	eukaryotic translation initiation factor 2A	Intron
Rr397681	regulatory region 397681	658 bp downstream
Rr577247	regulatory region 577247	881 bp distal
Rr577248	regulatory region 577248	1105 bp distal
Rr577249	regulatory region 577249	330 bp distal
Serp1	stress-associated endoplasmic reticulum protein 1	828 bp upstream
Tssr886	transcription start site region 886	975 bp upstream
Tssr29207	transcription start site region 29207	1584 bp downstream
Tssr29208	transcription start site region 29208	868 bp downstream
Tssr29209	transcription start site region 29209	702 bp downstream
Tssr29210	transcription start site region 29210	651 bp downstream
Tssr33349	transcription start site region 33349	1552 bp upstream
Tssr33350	transcription start site region 33350	984 bp upstream
Tssr33351	transcription start site region 33351	951 bp upstream
Tssr33352	transcription start site region 33352	924 bp upstream
Tssr33353	transcription start site region 33353	840 bp upstream
Tssr33354	transcription start site region 33354	815 bp upstream