rs262745940 SNP Detail

Summary

• ID
  rs262745940
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129997753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATTCAT ATGAGTGTTT
  TGCTTGTGTG CCTGTGCACC ACACGGATGC AGTGCCGGTG GATGCCAGCA GAGGGCACTG
  GATCCAGTCA ATCCAGATTT ACAGACCGCT GTGAGCCACT GTGTGGGTGC TGGGAACTGA
  ACCCAGCTCC TCTAGAAGAG CAGCGGCGCT CTTACCCGCG GGGTCACCTC ATCCCTCACC
  S
  TTTCATGTAA AGTGCGCTGC CCTCCCTTCT CCGCAGCTCT GCTTTCCTCA GAAGCTCAGC
  CTCTGGTCTC TGAGTCTTTT TGGAGAGGAG CTCTAGAAAA TGTCTGACTT GAGGCTACCT
  CAGACTCTCC AGTAGTCTGC CAACTGCTAG CTTTTCTAGT TTTGTTTTTA GACGGTTTCA
  CTACGCAGCC CAGGGTAGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321317083	CHEV_4_129781204	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262745940					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129997753 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	1495 bp downstream
Rr600439	regulatory region 600439	1392 bp distal
Rr600440	regulatory region 600440	893 bp distal
Rr600441	regulatory region 600441	119 bp distal
Rr600442	regulatory region 600442	542 bp proximal
Tssr39229	transcription start site region 39229	926 bp upstream