rs262720449 SNP Detail

Summary

• ID
  rs262720449
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5509813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTACTTTG CCAGGGCAGC AGTAACTTGT
  TTCTTGTTTG AAAATAAAGG GACTTCCTGT CCCCACAGTT TTATCTGGGT TGTTTGAGAA
  GAAGAAAAAA AAAAAAAAGC TCGTCTTACA GAAGCCAGGC AGGTACCACC TTGCTTTCCC
  M
  AGGCAGATGA AGTAGGTGAA AGGTTAGTCG CACACCCACT CCAACAGCCC AGCCGGAACT
  GCCTGGCAGC TCAGTCAACA TGGGGAAGTT TAGTAGGTGA AGGGTCACTC TTGTGCAGTA
  ATAACCTTCC ATGCATCAAC GCCCAGGCAT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729371	CHEV_6_5459813	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262720449					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5509813 () rs orientation: forward

Symbol	Name	Function Class
Rr406959	regulatory region 406959	within coordinates
Rr626154	regulatory region 626154	1603 bp distal
Rr626155	regulatory region 626155	within coordinates
Tssr1775	transcription start site region 1775	1324 bp upstream
Tssr54862	transcription start site region 54862	1335 bp upstream