rs262672243 SNP Detail

Summary

• ID
  rs262672243
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:88998616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCCTCCT GCGGGTCCGC
  GCTTCTTACC CACGGCGTGC GCGCGCGGTT CCTCCGGCTC CTGCGAGGCG GATGCCTCCT
  CACCAGCCCG GGGGCTGGCC GCCCTGCCCT CCTCCGACAG CCCCTCTGCA ATAGGCTGCA
  GCCCAAGTCG ATTTTTCTTC CTCCGCGGAG GGACGGGTGG GGGAGGCGGT CGAGGCGGGA
  Y
  CAAAGCCCAC CCAGCCGGGG GGTCCCGGGG CGGGACTGGC GGAGGCTGGG CTCGGCTTCT
  CGACCGGAGT TCCTTGAAGG TGGTGACTTC TCGGGGAGGT GCCAAAGAAC CTCCCAAGGA
  CCCAGTCGGC GGGAGCTCAG TGTCGGGCGA GAAGACTATG AGCCAGTCGC TGCGATCTTT
  CTTGGCCTGC GGCACAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss358806303	MGP_WTSI_3_88895231	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs262672243					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358806303	MGP_WTSI_3_88895231	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88998616 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13396	CpG island 13396	within coordinates
Cpgi13397	CpG island 13397	1746 bp proximal
Gm65858	predicted gene, 65858	1176 bp downstream
Rr397780	regulatory region 397780	1092 bp downstream
Rr579943	regulatory region 579943	774 bp distal
Rr579944	regulatory region 579944	451 bp distal
Rr579945	regulatory region 579945	1971 bp proximal
Rusc1	RUN and SH3 domain containing 1	Coding-NonSynonymous
Tssr34080	transcription start site region 34080	1640 bp upstream
Tssr34081	transcription start site region 34081	1593 bp upstream
Tssr34082	transcription start site region 34082	1550 bp upstream
Tssr34083	transcription start site region 34083	1439 bp upstream
Tssr34084	transcription start site region 34084	1301 bp upstream
Tssr34085	transcription start site region 34085	221 bp downstream
Tssr34086	transcription start site region 34086	1976 bp downstream