rs262629154 SNP Detail

Summary

• ID
  rs262629154
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151946593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTTAAA AAAAAAAAAA
  AAGCAAGCCG GGGGGGGGGG GGGGGGCGTG GTGGCGCAAG CCTTTAATCC CAGCAGAGGA
  GGCAGAGGCA GGTGGATTTC TGAGTTCGAG GCCAGCCTGG TCTACAAAGT GAGTTCCAGG
  ACAGCCAGGG CTTCAGAGAA ACCCTGTCTT GAAAAACAAA AACCAAAACA AACAAAAAAG
  S
  CTGGTTCTTC AAATGGAGCC AAATGGGGTT TATACTGTCC TTTCAACATC AGCTTCTCGA
  ATGGAATATT ACAGAGACGA TGATGTACAG GATCCAGGTT GACTTGGAAG TGGCTCAGCC
  TCTCTAGGGA CACTCATTGT TGGAAACCAC GCACCAGGCT AGGAGGAAGC ACAAGTCACA
  GGAGCGGGCT TGTACAGCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356144612	MGP_WTSI_2_151930409	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	C	C	C	G	C	G	C	G	G	C	G	G	C	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262629154					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	C	C	C	G	C	G	C	G	G	C	G	G	C	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356144612	MGP_WTSI_2_151930409	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151946593 () rs orientation: forward

Symbol	Name	Function Class
9230118N01Rik	RIKEN cDNA 9230118N01 gene	4 bp downstream
Cpgi12438	CpG island 12438	335 bp proximal
Gm31475	predicted gene, 31475	1509 bp upstream
Rr567286	regulatory region 567286	1680 bp distal
Rr567287	regulatory region 567287	10 bp proximal
Rr567288	regulatory region 567288	773 bp proximal
Rr567289	regulatory region 567289	835 bp proximal
Rr567290	regulatory region 567290	987 bp proximal
Rr567291	regulatory region 567291	1429 bp proximal
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)	843 bp upstream
Tssr20767	transcription start site region 20767	129 bp upstream
Tssr20768	transcription start site region 20768	241 bp upstream
Tssr20769	transcription start site region 20769	1049 bp upstream
Tssr20770	transcription start site region 20770	1583 bp upstream
Tssr26780	transcription start site region 26780	694 bp downstream
Tssr26781	transcription start site region 26781	1367 bp downstream